ABOUT EVENT
BDG LifeSciences is a distinguished bioinformatics company established in 2010 and operates globally. Headquartered in India the company specializes in facilitating workshops, training programs, novel & innovative research projects, and online courses in technologies of bioinformatics & life science. The company is registered under the Ministry of MSME (Micro, Small, and Medium Enterprises), Government of India, with the registration number UDYAM-UP-01-0019151. Recently, BDG Lifesciences, India has authorized BBR Group Pty Ltd., Australia (ACN 608 550 849), to operate its programs in Australia & New Zealand.
With a focus on practical application of technology, where participants work on their own computer/laptop on software/servers, BDG LifeSciences has been a leader in the sector for the last 14 years. Since its inception, BDG LifeSciences has successfully educated a diverse range of participants globally, including students, scientists, faculty members, professors, and corporate executives
To view the pictures of our previous events click here-1 and click here-2. To view, the listing of upcoming events kindly click here and our previous workshops can be viewed here. To view the video feedback of our previous events kindly visit our YouTube Channel
OPERATING SYSTEM
WINDOWS 10 WITH I3 OR ABOVE PROCESSOR
TOPICS
MD SIMULATION OF A PROTEIN USING NAMD -VMD ON WINDOWS
THEORY OF MD SIMULATION
INSTALLATION OF SOFTWARE
PREPARATION OF INPUT FILES
SOLVATION
SIMULATION IN PERIODIC BOUNDARY CONDITIONS
VMD ANALYSIS
PLOTTING THE DATA
MD SIMULATION OF A PROTEIN USING GROMACS
INSTALLATION OF UBUNTU(VIRTUAL BOX)
INSTALLATION OF GROMACS
PREPARATION OF INPUT FILES
SOLVATION
IONIZTION
MINIMIZATION
NPT EQILIBRATION PHASE 1
NVT EQUILIBRATION PHASE 2
VMD AND QTGRACE/XMGRACE ANALYSIS
PRACTICAL APPLICATION
DAY 1
1. THEORY OF MD SIMULATION
2. INSTALLATION OF SOFTWARES
I) NAMD
II) VMD
III) NAMD FILES
3. WORKING IN CMD AND VMD TK CONSOLE THROUGH WORKING DIRECTORY
4. PREPARATION OF APOPROTEIN
DAY 2
1. LEARNING PGN SCRIPT
2. RUNNING PSFGEN TO PREPARE INPUT PDB AND PSF FILES
3. LEARNING INPUT FILES OF SIMULATION
I) PDB
II) PSF
III) FORCE FIELD PARAMETER FILES
IV) CONFIGURATION FILE
DAY 3:
1. IMPORTANCE OF SOLVATION
2. SOLVATION IN WATER SPHERE
3. SOLVATION IN WATER BOX
DAY 4
4. RUNNING SIMULATION IN WATER SPHERE-NON PERIODIC BOUNDARY CONDITION
5. RUNNING SIMULATION IN WATER BOX-PERIODIC BOUNDARY CONDITION
6. PREPARATION OF OUTPUT FILES
DAY 5
1. ANALYSIS OF SIMULATION FOR WATER SPHERE
2. ANALYSIS OF SIMULATION FOR WATER BOX
3. THEORY OF GROMACS
4. INSTALLATION OF VIRTUAL BOX
5. INSTALLATION OF GROMACS
DAY 6
1. PREPARATION OF INPUT FILES
2. SOLVATION
3. IONIZATION
DAY 7:
1. MINIMIZATION
2. EQUILIBRATION
NPT
NVT
3. ANALYSIS
- It is recommended to provide GMAIL ID for regsitration as the recorded video session will be provided on YouTube.
- Kindly provide that email ID by which you use YouTube.
- Interactive training sessions will be conducted on Google Meet/Zoom to give users a better learning experience.
- As it is with a LIVE TRAINER hence practical application, i.e., the experiments/tasks to be performed can be done in the best explainable manner.
- In this Online Workshop, there will be a LIVE trainer who will solve queries along with training.
- Video recording of steps will be provided at the end of the session to give the user a unique learning experience.
- Make sure you register under the right category. If you register under the wrong category then your registration will be invalid and NO REFUND WILL BE MADE IN THIS CASE. This is your mistake and the company is not responsible for it.
- To avoid this do read the description of the ticket before selecting and proceeding with payment.
- You need to upload your professional ID which can be your Student ID Card or Research Institute ID Card or Company ID Card.
- BDG Lifesceiences (OPC) Private Limited is registered under Ministry of MSME(Micro, Small and Medium Enterprises), Government of India with Registration Number:UDYAM-UP-01-0019151 hence the certificate will be provided of it.
- The certificate will be issued as per the details which you will provide in the registration form while registering before payment.
- Once you register, relax we will send you the meeting link after the workshop registration gets over.
- After registration you will receive a welcome email with all the details and the meeting link four hours before the first session; if you haven't received it in your inbox, please check your SPAM/JUNK folder two hours before the session.
- The program is SELF-PACED.
- After each session video of that particular session will be shared with you so you can go through as many times as you want and perfect yourself in the topics & tasks.
- If you miss any session then NO PROBLEM you can still perform the tasks by going through the video of that particular session.
- We want to make sure that you learn properly hence the training certificate will be given ONLY on successful completion of all the tasks given by the trainer.
- The certificates of all our Online programs are sent by email(softcopy) which has a unique barcode. You can take a print of that on heavy cardstock or photo paper and get it laminated if required.
- The registration is NON-REFUNDABLE and NON-TRANSFERABLE.
- BDG Lifesciences (OPC) Pvt. Ltd., India reserves the right of admission in all our programs.
- If you are removed or your registration is canceled then there will be no answer to that. We have our own reasons for such an act of ours
- If we do not wish to give this workshop to any participant then we will refund their amount.
- You should also read the Terms & Conditions page as well as the FAQs page.For any assistance kindly chat with our AI Assistant BioBot on the website www.bdglifesciences.com
TICKETS
MD Simulations GROMACS, VMD & NAMD Certificate Online Training
Online
Paid
Event Live Link : Open streaming website
Dec 25th, 2024 3:00 PM - Dec 31st, 2024 4:30 PM GMT Dec 25th 3:00 PM - Dec 31st 4:30 PM GMTHosted by
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